Path: csiph.com!eternal-september.org!feeder.eternal-september.org!aioe.org!bofh.it!news.nic.it!robomod
From: Sascha Steinbiss <satta@tetrinetsucht.de>
Newsgroups: linux.debian.maint.java
Subject: Re: [Debian-med-packaging] Help getting missing classes found by prottest
Date: Fri, 16 Oct 2015 23:40:03 +0200
Message-ID: <qkkTh-1Tk-43@gated-at.bofh.it>
References: <qkjNw-mq-5@gated-at.bofh.it>
X-Original-To: Andreas Tille <andreas@an3as.eu>
X-Mailbox-Line: From debian-java-request@lists.debian.org  Fri Oct 16 21:30:21 2015
Old-Return-Path: <satta@tetrinetsucht.de>
X-Amavis-Spam-Status: No, score=-3.01 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, LDO_WHITELIST=-5, MEDS=2, MEDS2=2, T_RP_MATCHES_RCVD=-0.01] autolearn=no autolearn_force=no
X-Policyd-Weight: using cached result; rate: -6.1
X-Greylist: delayed 1387 seconds by postgrey-1.35 at bendel; Fri, 16 Oct 2015 21:14:53 UTC
Content-Type: text/plain; charset=utf-8
MIME-Version: 1.0 (Mac OS X Mail 9.0 \(3096.1\))
Content-Transfer-Encoding: quoted-printable
X-Mailer: Apple Mail (2.3096.1)
X-Sa-Exim-Connect-IP: 86.6.158.52
X-Sa-Exim-Mail-From: satta@tetrinetsucht.de
X-Sa-Exim-Version: 4.2.1 (built Mon, 26 Dec 2011 16:57:07 +0000)
X-Sa-Exim-Scanned: Yes (on tetrinetsucht.de)
X-Mailing-List: <debian-java@lists.debian.org> archive/latest/18790
List-ID: <debian-java.lists.debian.org>
List-URL: <https://lists.debian.org/debian-java/>
List-Archive: https://lists.debian.org/msgid-search/2C0917B4-A5B3-4882-A8F1-484A05ED74AC@tetrinetsucht.de
Approved: robomod@news.nic.it
Lines: 38
Organization: linux.* mail to news gateway
Sender: robomod@news.nic.it
X-Original-Cc: Debian Java List <debian-java@lists.debian.org>, Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
X-Original-Date: Fri, 16 Oct 2015 21:51:30 +0100
X-Original-Message-ID: <2C0917B4-A5B3-4882-A8F1-484A05ED74AC@tetrinetsucht.de>
X-Original-References: <20151016202647.GD14042@an3as.eu>
Xref: csiph.com linux.debian.maint.java:8476

Hi Andreas,

[=E2=80=A6]
> i    [mkdir] Created dir: /build/prottest-3.4+dfsg/build/empty
>    [javac] Compiling 120 source files to =
/build/prottest-3.4+dfsg/build/classes
>    [javac] =
/build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.j=
ava:23: error: package mpi does not exist
>    [javac] import mpi.MPI;
>    [javac]           ^
>    [javac] =
/build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.j=
ava:55: error: package pal.misc does not exist
>    [javac] import pal.misc.Identifier;
>    [javac]                ^
>    [javac] =
/build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/ProtTest.j=
ava:56: error: package pal.tree does not exist
>    [javac] import pal.tree.Tree;
>    [javac]                ^
>    [javac] =
/build/prottest-3.4+dfsg/src/main/java/es/uvigo/darwin/prottest/util/facto=
ry/ProtTestFactory.java:30: error: package pal.alignment does not exist
>    [javac] import pal.alignment.Alignment;
>    [javac]                     ^
> ...
>=20
>=20
> I have no idea why neither mpi nor pal classes are found since I tried
> to add mpj and pal but obviously failed.

If I modify buildconf/project.properties to use the Debian paths, I am =
able to build.
I can push my changes to the repo if you want.

Cheers
Sascha=