Path: csiph.com!news.mixmin.net!weretis.net!feeder1.news.weretis.net!newsfeed.CARNet.hr!news.spin.it!bofh.it!news.nic.it!robomod From: Ioan Eugen Stan Newsgroups: linux.debian.maint.java Subject: Re: Help needed for Java dependencies of Beast2 package Date: Wed, 30 Sep 2015 08:00:01 +0200 Message-ID: References: X-Original-To: Markus Koschany ,Debian Med Packaging Team X-Mailbox-Line: From debian-java-request@lists.debian.org Wed Sep 30 05:59:23 2015 Old-Return-Path: X-Amavis-Spam-Status: No, score=-5.679 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, FOURLA=0.1, FREEMAIL_FROM=0.001, HTML_MESSAGE=2, LDO_WHITELIST=-5, MURPHY_DRUGS_REL8=0.02, RCVD_IN_DNSWL_LOW=-0.7] autolearn=no autolearn_force=no X-Policyd-Weight: using cached result; rate: -7 Dkim-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=in-reply-to:references:mime-version:content-type :content-transfer-encoding:subject:from:date:to:cc:message-id; bh=lZc5FovVUVHMtFzbKwnTWNv0pSK70fpHHIMsADpxmFY=; b=yDgZkUCuvY2f9oeyjI6DWKyBRowY7v/lyRT9sUZaf93hVokHrqJWLwDgdaJfQHfQd2 KTOZBnklZid1kR9wXC1t/IQJxPoXxTogf5LRdTjEnzRbl4crqyyiLw7daXwAwdc24DjF 3aCWXvSWZYHwdoFyLVc1fZllLTf2MmkQcY931OgfFncrzp9KKRnsf7eXaOu2/PTCrEss K4Upqc7no0sUlCusO7/k9/e0M9W9qw9NtvEomx6eZNr4trS+tZkcPQ27peQ4TW9JkM1S Ebf3S6VhcmjxnhfyH0W+3LoaX9jY/lezfJz6heqYSisw9W9aHA73dUe3tsvlEmd2kN3/ 01Aw== X-Received: by 10.194.179.103 with SMTP id df7mr2174951wjc.69.1443592734671; Tue, 29 Sep 2015 22:58:54 -0700 (PDT) MIME-Version: 1.0 Content-Type: multipart/alternative; boundary="----TI1DZEVUBZQJA1480I5MK6O7EALW8Y" Content-Transfer-Encoding: 8bit X-Mailing-List: archive/latest/18712 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/8CA17C75-8299-430F-BC22-636D26248716@gmail.com Approved: robomod@news.nic.it Lines: 62 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Cc: debian-java@lists.debian.org X-Original-Date: Wed, 30 Sep 2015 05:58:44 +0000 X-Original-Message-ID: <8CA17C75-8299-430F-BC22-636D26248716@gmail.com> X-Original-References: <20150929120734.GJ4276@an3as.eu> <560AC132.5080002@gambaru.de> Xref: csiph.com linux.debian.maint.java:8398 ------TI1DZEVUBZQJA1480I5MK6O7EALW8Y Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset=UTF-8 On 29 septembrie 2015 19:49:54 EEST, Markus Koschany wrote: >Am 29.09.2015 um 14:07 schrieb Andreas Tille: >> Hi, >> >> I intend to package Beast2 for the Debian Med team[1]. I was able to >> replace nearly all JARs that came with upstream tarball but there are >> two remaining ones: >> >> 1. antlr-runtime-4.5.jar >> It seems that we have antlr-runtime version 3 of this in the >> package libantlr3-runtime-java but this does not seem to be >> sufficient regarding some error messages like > >[...] > >> Is there any effort to package antlr 4.5 (or any simply patch >> to go with the existing package in the beast2 case)? >> > >I think this is your main blocker. antlr4 would be a completely new >package and nobody has packaged it yet or intends to do so in the near >future. > > >> 2. fest-sources.jar, fest.jar >> I guess besides some packaged libfest-*-java packages also >> git://anonscm.debian.org/pkg-java/fest-swing-1.x.git >> is needed if I look at these messages: > >I would skip the tests for now. The only class that requires fest-util >is > >src/beast/app/beauti/Beauti.java > >but fest-util has been packaged already. > >https://packages.qa.debian.org/f/fest-util.html > >Regards, > >Markus I agree. Skip the compilation of the test classes. For point 1 you need antlr4. -- Ioan Eugen Stan ------TI1DZEVUBZQJA1480I5MK6O7EALW8Y Content-Type: text/html; charset=utf-8 Content-Transfer-Encoding: 8bit
On 29 septembrie 2015 19:49:54 EEST, Markus Koschany <apo@gambaru.de> wrote:
Am 29.09.2015 um 14:07 schrieb Andreas Tille:
 Hi,
 
 I intend to package Beast2 for the Debian Med team[1].  I was able to
 replace nearly all JARs that came with upstream tarball but there are
 two remaining ones:
 
   1. antlr-runtime-4.5.jar
      It seems that we have antlr-runtime version 3 of this in the
      package libantlr3-runtime-java but this does not seem to be
      sufficient regarding some error messages like

[...]

     Is there any effort to package antlr 4.5 (or any simply patch
     to go with the existing package in the beast2 case)?


I think this is your main blocker. antlr4 would be a completely
new
package and nobody has packaged it yet or intends to do so in the near
future.


   2. fest-sources.jar, fest.jar
     I guess besides some packaged libfest-*-java packages also
       git://anonscm.debian.org/pkg-java/fest-swing-1.x.git
     is needed if I look at these messages:

I would skip the tests for now. The only class that requires fest-util is

src/beast/app/beauti/Beauti.java

but fest-util has been packaged already.

https://packages.qa.debian.org/f/fest-util.html

Regards,

Markus


I agree. Skip the compilation of the test classes. For point 1 you need antlr4.
--
Ioan Eugen Stan ------TI1DZEVUBZQJA1480I5MK6O7EALW8Y--