Path: csiph.com!optima2.xanadu-bbs.net!xanadu-bbs.net!feeder.erje.net!us.feeder.erje.net!news2.arglkargh.de!news.mixmin.net!aioe.org!bofh.it!news.nic.it!robomod From: Vincent Danjean Newsgroups: linux.debian.maint.java Subject: Re: Asking a review of the htsjdk package Date: Mon, 07 Sep 2015 09:40:02 +0200 Message-ID: References: X-Original-To: Emmanuel Bourg X-Mailbox-Line: From debian-java-request@lists.debian.org Mon Sep 7 07:36:30 2015 Old-Return-Path: X-Amavis-Spam-Status: No, score=-6.48 tagged_above=-10000 required=5.3 tests=[BAYES_00=-2, FREEMAIL_FORGED_FROMDOMAIN=0.198, FREEMAIL_FROM=0.001, HEADER_FROM_DIFFERENT_DOMAINS=0.001, LDO_WHITELIST=-5, MURPHY_DRUGS_REL8=0.02, RCVD_IN_DNSWL_LOW=-0.7, WORD_WITHOUT_VOWELS=1] autolearn=ham autolearn_force=no X-Policyd-Weight: using cached result; rate: -6.1 User-Agent: Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.8.1.22) Gecko/20091109 Lightning/0.8 Thunderbird/2.0.0.22 Mnenhy/0.7.5.0 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Mailing-List: archive/latest/18640 List-ID: List-URL: List-Archive: https://lists.debian.org/msgid-search/55ED3E69.5070403@free.fr Approved: robomod@news.nic.it Lines: 33 Organization: linux.* mail to news gateway Sender: robomod@news.nic.it X-Original-Cc: debian-java@lists.debian.org, debian-med-packaging@lists.alioth.debian.org X-Original-Date: Mon, 7 Sep 2015 09:36:09 +0200 X-Original-Message-ID: <55ED3E69.5070403@free.fr> X-Original-References: <55ECC4AA.5030404@free.fr> <55ED3605.1000808@apache.org> Xref: csiph.com linux.debian.maint.java:8326 On 07/09/2015 09:00, Emmanuel Bourg wrote: > Le 07/09/2015 00:56, Vincent Danjean a écrit : > >> So, I created a new package (source package 'htsjdk') that is >> currently in the NEW queue. That said, I would be very pleased if >> someone from the java team can give a look at the package. I'm not >> very familiar with java packaging. Any comments are welcome. > > Hi Vincent, > > I got a quick look and the package is good. It could be refined by > adding the Maven artifacts, but if you don't need them that's not important. I do not know anything about maven (but the fact that it helps to manage java dependencies). So I wont try to add a pom file myself. htsjdk is only used (to my knowledge) by picard-tools whose build system checkout the source and rebuild it locally :-( So, I will have to heavily patch the build.xml file... I will ask for a review of this package too when it will be ready. Thank you for your review Vincent > Emmanuel Bourg > -- Vincent Danjean GPG key ID 0xD17897FA vdanjean@debian.org GPG key fingerprint: 621E 3509 654D D77C 43F5 CA4A F6AE F2AF D178 97FA Unofficial pkgs: http://moais.imag.fr/membres/vincent.danjean/deb.html APT repo: deb http://people.debian.org/~vdanjean/debian unstable main