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From: sfeam <sfeam@users.sourceforge.net>
Newsgroups: comp.graphics.apps.gnuplot
Subject: Re: Multiple Scatter Plots
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Date: Wed, 22 Feb 2012 10:48 -0800
Organization: gnuplot development team
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scap3y wrote:

> I want to make scatter plots from 2 different source files "test1.txt" and
> "test2.txt" but from different columns. I am just not able to get 2
> different scatters. My code is given below. Any help would be much
> appreciated.
> 
> ***
> 
> set multip
> multiplot> splot "./test1.txt" using 2:3:4 lt 1
> multiplot> splot "./test2.txt" using 2:3:4 lt 2
> multiplot> unset multi
> 
> ***

If you want both distributions shown on the same plot,
you shouldn't be using multiplot.  
Try
   splot "test1.txt" using 2:3:4, "test2.txt" using 2:3:4