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From: sfeam <sfeam@users.sourceforge.net>
Newsgroups: comp.graphics.apps.gnuplot
Subject: Re: multiplot & SVG term mouse
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Date: Sat, 31 Dec 2011 09:31:26 -0800
Organization: gnuplot development team
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Alex van der Spek wrote:

> Using a binary snapshot of 4.5 on Win Vista. Try this:
> 
> +++++++++++++++++++++++++++
> set term svg fixed mouse
> set out 'try.svg'
> set multiplot layout 2,1
> unset key
> plot x
> set key default
> plot sin(x),cos(x)
> unset multiplot
> set out
> ++++++++++++++++++++++++++++
> 
> The mouse coordinates in the upper panel are not relative to the upper
> plot y scale. This was expected.
> 
> Clicking the 'green' key legend label turns the cos(x) plot off, this
> was expected. However, clicking the 'red' legend label turns the x
> plot in the upper panel off, this was NOT expected. Don't know if this
> is a bug, I thought I should report it anyway.

I believe that bug was fixed earlier this month.
Your binary snapshot may be older than the fix.