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| Date | 2018-02-14 15:45 +0100 |
|---|---|
| From | "soledad.esteban" <soledad.esteban@icp.cat> |
| Organization | BIOSCI/IUBio, Biology Dept., Indiana University |
| subject | Course NGS data for Genomic and population genetic analyses, May 14-17, Barcelona, Spain |
| Newsgroups | bionet.maize |
| Message-ID | <mailman.261.1518622997.15473.maize@net.bio.net> (permalink) |
Dear colleagues, This course might be of interest for the members of this list: MANIPULATION OF NGS DATA FOR GENOMIC AND POPULATION GENETICS ANALYSES. Date: May 14th-17th, 2018, Barcelona (Spain). PLACE: Capellades, Barcelona. INSTRUCTORS: Dr. François Sabot (Institute of Research for Development, France) and Dr. Christine Tranchant-Dubreuil (Institute of Research for Development, France) PROGRAM: - Monday, May 14th, 2018. Introduction to NGS sequencing platforms. Introduction to basic command lines. Basic raw data manipulations (counting sequences, listing files). - Tuesday, May 15th, 2018. Raw data QC & Cleaning. Introduction to TOGGLe, a NGS pipeline framework. Mapping: principle, tools, execution. Mapping: cleaning, data control, realigning, duplicates marking. - Wednesday, May 16th, 2018. SNP calling: raw calling, cleaning calling, filtering. VCF manipulations: filtering on MAF, heterozygosity… Impact of SNPs on genes. Population genomics using sNMF. - Thursday, May 17th, 2018. Context-based analyses. Piping large scale analyses for multiple samples using TOGGLe. Testing new tools and different conditions to answer different biological questions. Questions. With best regards Sole Soledad De Esteban-Trivigno Institut Català de Paleontologia Miquel Crusafont (ICP) Campus de la Universitat Autònoma de Barcelona Cerdanyola del Vallès (Barcelona). Spain www.icp.cat
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Course NGS data for Genomic and population genetic analyses, May 14-17, Barcelona, Spain "soledad.esteban" <soledad.esteban@icp.cat> - 2018-02-14 15:45 +0100
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